PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00990.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 173aa    MW: 19336.1 Da    PI: 9.5731
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00990.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB109.91.5e-3460151293
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       r+ d ++P++ ++r++++vlP +akis+dak+t+qecvs+fi fvtsea++ ++re +  i ++d+   +a+l f+dyvepl+v+l+kyr  
  Migut.E00990.1.p  60 RKADLYMPMTYIVRVLRRVLPPHAKISDDAKKTIQECVSKFIFFVTSEANETAHREYKTPIYPEDVTAGMASLEFNDYVEPLTVFLNKYRAE 151
                       67899*************************************************************************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-3160156IPR009072Histone-fold
SuperFamilySSF471131.42E-2663155IPR009072Histone-fold
PfamPF008081.2E-1366126IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-893111No hitNo description
PRINTSPR006151.7E-8112130No hitNo description
PRINTSPR006151.7E-8131149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEIGGNSNNQ HKDTTRASAS ASASVILLIK LRFVGARHTH NLPAINVGDQ NLAPPQDYRR  60
KADLYMPMTY IVRVLRRVLP PHAKISDDAK KTIQECVSKF IFFVTSEANE TAHREYKTPI  120
YPEDVTAGMA SLEFNDYVEP LTVFLNKYRA EDPKRTASVQ VQLPMAMRSA AQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-2660149392NF-YB
4csr_A4e-2660149493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B4e-2660149493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833609.12e-96PREDICTED: nuclear transcription factor Y subunit B-9-like
SwissprotQ9SFD82e-34NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A022RVS17e-82A0A022RVS1_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-35NF-YB family protein